EXPath Tool 2.0

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Get the desktop standalone version and its extended biological data packages.


⚠️
Important Deployment Notice

The complete, step-by-step installation and configuration guide is provided in the README.md file inside the main project package. Please open and follow the README.md instructions carefully while setting up your environment!

1. Core Platform

Standard offline edition. Includes the system interface, backend analysis pipelines, and core database schemas. Fully supports custom dataset analysis (Expression Tables, Custom Pathways, and GO annotations) out-of-the-box.

⚠️ Please Note: For the BLAST module, this light edition only supports building a database using your own uploaded FASTA files. Built-in genome databases are not included here.

  • File Name: Expathtool_Docker_Public.zip
  • Size: < 1 GB
  • Pre-requisites: Docker Desktop / Docker Compose

2. Extended Data Packages (Optional)

To unlock Built-in Species Selections and perform BLAST alignments against built-in genomes, download the following heavy biological data packages and place them exactly as guided:

Data Package & Download 📂 Where to Place (Deployment Target)
Species Database SQL
02_species_genomic_tables.sql
📥 Download SQL
Place this file directly into the existing db_init/ directory before launching Docker.
⚠️ Do not compress or rename this file. MySQL will automatically initialize it.
Built-in BLAST Sequences
BLAST.zip
📥 Download BLAST Pack
Extract the ZIP. Drag and drop the complete BLAST/ folder directly into the project root directory (the same level as manage.py).

Example Demo Datasets

These sample datasets are provided for users to test.

Example_dataset_expression.txt
📥 Get Expression
Example_dataset_pathway.txt
📥 Get Pathway
Example_dataset_GO.txt
📥 Get GO
Example_dataset_additional_gene_description.txt
📥 Get Additional